PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01003759G0160

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB_related

Protein Properties

Length: 447aa MW: 50354.2 Da PI: 9.6344

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003759G0160	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.4	1.1e-10	2	44	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l PH01003759G0160 2 EWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 44 6***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.614	1	48	IPR017930	Myb domain
SMART	SM00717	1.4E-8	1	46	IPR001005	SANT/Myb domain
CDD	cd11659	1.56E-28	1	47	No hit	No description
SuperFamily	SSF46689	1.79E-11	2	50	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.3E-11	2	45	IPR009057	Homeodomain-like
Pfam	PF13921	1.1E-9	3	57	No hit	No description
Pfam	PF13359	1.4E-8	380	445	IPR027806	Harbinger transposase-derived nuclease domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
TEWTREEDEK LLHLAKLMPT QWRTIAPIVG RTPSQCLERY EKLLDAACVK DENYEPNDDP 60 RKLRPGEIDP NPESKPARPD PVDMDEDEKE MLSEARARLA NTRGKKAKRK AREKQLEEAR 120 RLASLQKRRE LKAAGIDTRQ RKRKRKGIDY NAEIPFEKRP PPGFYDTVGE DRPLEHVQFP 180 TTIEDLEGKR RVDIEAQLRK QDIARNKVLQ RQDAPAAIMQ ANKLNDPEAV IKRSKLMLPP 240 PQISDHELEE IAKMGNAGDP ALAEELGEGS SATRTLLASN SQTPRLGMTP LRTPQRTPAG 300 KGDAIMMEAE NLARLRESQT PLLGGDNPEL HPSDFSGVTP RKKEIQTPNP MATPLASPGP 360 GVTPRIGMTP SRDGNSFGLT PKGKYYLVDA GYPNWPGYLA PYKGEKYHVP EFHRGVDPTN 420 AKEKFNRVYS SVRKIVEQTF DVWKMK*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

TEWTREEDEK LLHLAKLMPT QWRTIAPIVG RTPSQCLERY EKLLDAACVK DENYEPNDDP  60
RKLRPGEIDP NPESKPARPD PVDMDEDEKE MLSEARARLA NTRGKKAKRK AREKQLEEAR  120
RLASLQKRRE LKAAGIDTRQ RKRKRKGIDY NAEIPFEKRP PPGFYDTVGE DRPLEHVQFP  180
TTIEDLEGKR RVDIEAQLRK QDIARNKVLQ RQDAPAAIMQ ANKLNDPEAV IKRSKLMLPP  240
PQISDHELEE IAKMGNAGDP ALAEELGEGS SATRTLLASN SQTPRLGMTP LRTPQRTPAG  300
KGDAIMMEAE NLARLRESQT PLLGGDNPEL HPSDFSGVTP RKKEIQTPNP MATPLASPGP  360
GVTPRIGMTP SRDGNSFGLT PKGKYYLVDA GYPNWPGYLA PYKGEKYHVP EFHRGVDPTN  420
AKEKFNRVYS SVRKIVEQTF DVWKMK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
5xjc_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
5yzg_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
5z56_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
5z57_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
5z58_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
6ff4_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
6ff7_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
6icz_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
6id0_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
6id1_L	1e-123	1	381	61	443	Cell division cycle 5-like protein
6qdv_O	1e-123	1	381	61	443	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	145	KRRELKAAGIDTRQRKRKRK
2	140	145	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003759G0160

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102248	0.0	AK102248.1 Oryza sativa Japonica Group cDNA clone:J033088F07, full insert sequence.
GenBank	AL662963	0.0	AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576174.1	0.0	cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A453LCM4	0.0	A0A453LCM4_AEGTS; Uncharacterized protein
TrEMBL	I1IIB3	0.0	I1IIB3_BRADI; Uncharacterized protein
STRING	BRADI4G07110.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4416	35	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]