PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003770G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 261aa    MW: 27947 Da    PI: 10.997
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003770G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.41.5e-13170216450
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      ++r rr++kNRe+A rsR+RK+a++ eLe   ++L  eN++L+++ e
  PH01003770G0040 170 DRRHRRMIKNRESAARSRARKQAYTNELELALAQLRRENEMLINRQE 216
                      6899**************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-8167232IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.197169219IPR004827Basic-leucine zipper domain
PfamPF001703.0E-11171218IPR004827Basic-leucine zipper domain
CDDcd147078.50E-22171224No hitNo description
SuperFamilySSF579598.75E-10171219No hitNo description
Gene3DG3DSA:1.20.5.1702.2E-11171218No hitNo description
PROSITE patternPS000360174189IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLGQAPVSFR ALRVGKVTLT AEGDLAHALW QVAGRMLGQA PVPFRALRVG KVTLTAEEIV  60
LNLEVTRRPQ FMDFLASAPV PQPPTPPPPP LPLPLPPTAL SLSSTLEFTY LSAGAGAGPP  120
SNSSSGDDSR GDFMPDSYAG ARTDIFSFAA RKHGAAADPP QCPGAGAGGD RRHRRMIKNR  180
ESAARSRARK QAYTNELELA LAQLRRENEM LINRQEVLNV RQRTAMAAQC SYAAVAPIAL  240
SDRGRTLTRK IGAILFATWN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003770G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016520.0FP101652.1 Phyllostachys edulis cDNA clone: bphylf047d22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573205.12e-29protein FD
TrEMBLI1HVY45e-28I1HVY4_BRADI; Uncharacterized protein
STRINGBRADI3G00300.18e-29(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146021020