PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003790G0150
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 214aa    MW: 22883.3 Da    PI: 8.082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003790G0150genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.3e-11135182455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+ Lq
  PH01003790G0150 135 SHSLAERARREKISERMKILQDLVPGC----NKVIGKASVLDEIINYIQALQ 182
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-18129198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.07E-11129186No hitNo description
Gene3DG3DSA:4.10.280.101.1E-18131200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.221131181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-11137187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MDPAPTLTAE LWRPPHLACG GGRAVEASSA VTGQSNGSRG GGSARRRQRE SATSEDDSSR  60
LVSTSGGGGG QDLTDSEAKR FKAIKSSGDD GSLKTEAEAD SRNASKAFDQ NPPPAEPPKQ  120
DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKASV LDEIINYIQA  180
LQRQVEFLSM KLEAVNAHVN NGVEAFPSKD CNAV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003790G0150
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008630.0FP100863.1 Phyllostachys edulis cDNA clone: bphyem119i23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981383.11e-109transcription factor BHLH089
SwissprotQ84T083e-98BH089_ORYSJ; Transcription factor BHLH089
TrEMBLK4AE241e-107K4AE24_SETIT; Uncharacterized protein
STRINGPavir.J31567.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.19e-56BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]