PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003903G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 278aa    MW: 29898.6 Da    PI: 6.4304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003903G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031152176123
                      EEETTTT..EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg..ksFsrksnLkrHirtH 23 
                      y C+ Cg  k+F    +L++H+r +
  PH01003903G0070 152 YACERCGgkKRFAVLADLRSHLRHC 176
                      89********************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAAIRRRLAA SLSAESQPLS SSDIHSVSSE ISSAAHLVVL NAASLLSSFA PFPAPPPPPA  60
PPAPVQELPG AAASAQELPQ EAAKGDGDYD VVELDAAELL AEHAKPPAGR DVRFSCPYAG  120
CNRNRAHRRF RPLKSSVCAR NHFRRSHCPK LYACERCGGK KRFAVLADLR SHLRHCGEEA  180
QWRCSCGTTF SRKDKLFGHL SLFEGHMPAI TEPNKHVVTA PTEASLDMME EGGIEGNCDR  240
EEDEEGGFDP EFFKEWMEEL RSGAGGTSWP GPAAAGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003903G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648771.11e-148PREDICTED: protein indeterminate-domain 13-like
TrEMBLJ3LE231e-147J3LE23_ORYBR; Uncharacterized protein
STRINGOB02G28900.11e-148(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.34e-41C2H2 family protein