PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003908G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 164aa    MW: 17883.4 Da    PI: 4.4429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003908G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY41.13.4e-134452159
                     -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY 21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                      rsY+rC ++    Cp++++v++s+ dp+++eitY g+H+++
  PH01003908G0140  4 RRSYFRCKHRyeqLCPATRQVQQSEADPSMLEITYIGDHTCT 45
                     69*******98878**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007747.0E-10246IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.1E-13346IPR003657WRKY domain
PfamPF031068.5E-13344IPR003657WRKY domain
SuperFamilySSF1182903.53E-11446IPR003657WRKY domain
PROSITE profilePS5081110.074542IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MNARRSYFRC KHRYEQLCPA TRQVQQSEAD PSMLEITYIG DHTCTQNQQA IMDNGIIKRE  60
DVLSPSTEFE SGRAHRAPAD HESTHGDDGA PVHLDGSFSC VTASDLQVTF DGRCYTNTYY  120
TAAAGGDFDD ELAAAAPSLG GFTSTSTSAM IWELISSNNT WTD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003908G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-16WRKY DNA-binding protein 70