PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003917G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 164aa    MW: 17665.1 Da    PI: 8.5128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003917G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.58.7e-0981243123
              NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk.e 91 
                      +GfrF+Ptd +l+  +L + +++     ++   i+++d + v P  L    ++   ++++  F   + k+     +  + ++g W+ +  +k +
  PH01003917G0070   8 AGFRFDPTDADLMLGFLLPCLRSCApgADIILLIRDADPFAVSPDALLhGrRA-RPDSDTTLFLILSPKS-----PLVVGDTGAWRRQRVTKgA 95 
                      7*******************9998844444335**************733233.3344444444444443.....345667899*988766514 PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvm 123
                       +s++g++v  ++ L  y     +ge   Wvm
  PH01003917G0070  96 AVSEDGKAVAWRRELFAY---GADGETDGWVM 124
                      445599999999999999...45667899999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.0716155IPR003441NAC domain
SuperFamilySSF1019411.83E-106124IPR003441NAC domain
PfamPF023654.9E-58124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MAAAFISAGF RFDPTDADLM LGFLLPCLRS CAPGADIILL IRDADPFAVS PDALLHGRRA  60
RPDSDTTLFL ILSPKSPLVV GDTGAWRRQR VTKGAAVSED GKAVAWRREL FAYGADGETD  120
GWVMGFGSSV PRRAKNWCSA GSRRQSDSLM DLQVEGAHRS VQR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003917G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-