PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003928G0080
Common NameDREB1
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 227aa    MW: 25444.3 Da    PI: 5.1333
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003928G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1857106154
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                      ++y+GVr++  +g+WvAeIr+p   + r +r +lg+f ta eAa a+++a+++ +
  PH01003928G0080  57 CDYRGVRQRT-WGKWVAEIREP---N-RgRRLWLGSFPTALEAAHAYDEAARAVY 106
                      68*****999.**********8...3.35**********************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.9E-1357107IPR001471AP2/ERF domain
CDDcd000188.63E-2857117No hitNo description
PROSITE profilePS5103221.65458115IPR001471AP2/ERF domain
SMARTSM003802.8E-3258121IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2059116IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-3059116IPR001471AP2/ERF domain
PRINTSPR003674.8E-95970IPR001471AP2/ERF domain
PRINTSPR003674.8E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MRRKSTGPGS IAETIKRWRE QSQKLELEEE NASRKAPAKG SKRGCMAGKG GPENSICDYR  60
GVRQRTWGKW VAEIREPNRG RRLWLGSFPT ALEAAHAYDE AARAVYGSAA RVNFSENSTD  120
ASSGCTPAPS LPKSKGELES VEAKLHEVKT EVSDELGSIH DERKTLEVFL FRPEGRVLHE  180
EVDVGYEYFN VEELLEMIIV ELNADRKMEV HEEYQDGDDG FSLFSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-14591141571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003928G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8604410.0EU860441.1 Phyllostachys edulis DRE-binding protein DREB1 (DREB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314715.11e-114dehydration-responsive element-binding protein 2A isoform X4
SwissprotA2WL191e-111DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLB5AMY71e-165B5AMY7_9POAL; DRE-binding protein DREB1
STRINGBRADI2G04000.11e-113(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-38ERF family protein