PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003968G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 215aa    MW: 23759 Da    PI: 10.1327
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003968G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.13.1e-113594147
                     TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++++++a ++  g               +Wk+I + +g  +t  q++s+ qky
  PH01003968G0010 35 RESWTEQEHDKFLEALQLVLGSfntglylqwlrfdrDWKKIEAFVG-SKTVIQIRSHAQKY 94
                     789***************99889***********************.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.42E-1229100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-633100IPR009057Homeodomain-like
SMARTSM007175.7E-63497IPR001005SANT/Myb domain
PfamPF002493.9E-83594IPR001005SANT/Myb domain
CDDcd001676.12E-63795No hitNo description
TIGRFAMsTIGR015571.0E-76897IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MISANAPPPP DASAAASGED ASKKVRKPYT ITKSRESWTE QEHDKFLEAL QLVLGSFNTG  60
LYLQWLRFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK NGTSEHVPPP RPKRKAAHPY  120
PQKASKSEPG YALKTDSSSM LRNSGMNATV SSWTHNSIPP VVASSMVKVM PDFAQVYSFL  180
GSVFDPSTSG HLQKLKEMNP IDVETYLAVT NFGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtTranscriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003968G0010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0948531e-170FP094853.1 Phyllostachys edulis cDNA clone: bphyem208j03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689659.11e-118PREDICTED: protein REVEILLE 6 isoform X2
SwissprotQ8H0W33e-76RVE6_ARATH; Protein REVEILLE 6
SwissprotQ8RWU32e-76RVE8_ARATH; Protein REVEILLE 8
TrEMBLA0A3B6PMH21e-121A0A3B6PMH2_WHEAT; Uncharacterized protein
TrEMBLA0A446WH291e-121A0A446WH29_TRITD; Uncharacterized protein
STRINGOB02G35240.11e-117(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.22e-62MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Fogelmark K,Troein C
    Rethinking transcriptional activation in the Arabidopsis circadian clock.
    PLoS Comput. Biol., 2014. 10(7): p. e1003705
    [PMID:25033214]
  4. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  5. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]