PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003974G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 372aa    MW: 41524.4 Da    PI: 10.0405
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003974G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.7e-16711481699
                      EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       ++p +f  ++ ++++++   ++l+ +sg++W+ +l     s++ ++  GWkeFv+++ ++ g f+vF++dgrs+f   v vf++
  PH01003974G0030  71 SRIPSSFN-QYlQNEPTG--VISLKGQSGNTWRAEL--ASDSEGLFFVHGWKEFVRDHSIEFGHFLVFHYDGRSQF--SVVVFDN 148
                      47999997.664555444..8***************..**************************************..8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-1942150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2055149IPR015300DNA-binding pseudobarrel domain
CDDcd100174.00E-1555147No hitNo description
SMARTSM010194.6E-1156149IPR003340B3 DNA binding domain
PROSITE profilePS5086314.22656149IPR003340B3 DNA binding domain
PfamPF023628.5E-1569148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MVVRANENGK GKGKGKEGKE KETEKENGKG EGEGEAKIVV KEFFKVFMPD QSGERLVKFL  60
NPSVMLIVRH SRIPSSFNQY LQNEPTGVIS LKGQSGNTWR AELASDSEGL FFVHGWKEFV  120
RDHSIEFGHF LVFHYDGRSQ FSVVVFDNSG SEKLSAFHAQ PCKDVVIKIE HDEGDMGMNA  180
AGPSEILALP LEESNETTRK RIREIDDLME NGSPLKKCSD VLEKGKKKRP GASVGTSKAA  240
STSLNNTKDS SSSMSDENIS CNKSAKSQPI LFRMSKDVPR RGKSIMKGQR QPAVISQRRQ  300
VTEEEKNLVL QRAKRFKSKH PFTVQIMMAS YVYVGFFMSQ GDPSHYKQIN RPIKCPTLLS  360
TIPKKCSTNH M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003974G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615373.12e-95B3 domain-containing protein Os11g0197600
SwissprotQ2R9D21e-96Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A0A9DCS37e-99A0A0A9DCS3_ARUDO; Uncharacterized protein
STRINGOPUNC11G05820.12e-96(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-15B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]