PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01004013G0070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 220aa MW: 24224.6 Da PI: 4.0708

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004013G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.3	1.9e-06	174	204	13	43
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterq 43 ++L e+F+ ++yps++ +e LA++lgLt +q PH01004013G0070 174 DRLHEHFKIDQYPSRAVKESLAQELGLTFNQ 204 689************************9776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-5	157	205	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-7	159	205	IPR009057	Homeodomain-like
CDD	cd00086	8.61E-7	174	204	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MSLNYIPPQY YILLLQKVSP AAAAFANCPK QNDVSDLPSD DSEHKDFDPN MAEECVASQV 60 EGSSEEDGNE GSDSDDSNFV TSSHNSEPLK DKEKVDDLGL PSEDSGMMIM IQQDAVSSGS 120 KAGDPTNDLE GTTVQTNTEN SNLTNKDLEM GQDLVLPVSG RREAQRLYYK KLYDRLHEHF 180 KIDQYPSRAV KESLAQELGL TFNQLSCVEQ NPLWILLTG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004013G0070

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020171709.1	1e-34	homeobox protein HOX1A-like
TrEMBL	R7W8V2	2e-33	R7W8V2_AEGTA; Homeobox protein HOX1A
STRING	EMT18532	4e-34	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP32085	4	4