PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004070G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 580aa    MW: 60575.8 Da    PI: 9.1606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004070G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-0585107123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C+k F r  nL+ H r H
  PH01004070G0050  85 FVCEVCNKGFQREQNLQLHRRGH 107
                      89*******************88 PP
2zf-C2H211.60.00085162184123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  PH01004070G0050 162 WKCDKCSKRYAVQSDWKAHSKIC 184
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-784107No hitNo description
Gene3DG3DSA:3.30.160.608.0E-684107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004185107IPR015880Zinc finger, C2H2-like
PfamPF121713.8E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09485107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.9E-4150183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.01E-7157182No hitNo description
SMARTSM00355140162182IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MASNSSAAAV AALFGIRDGD QHDQIKPLLA QQHQQPPVAP PNAMAAGSGQ AAAAAPPVKK  60
KRNLPDPDAE VIALSPKTLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP WKLKQKNPAQ  120
VQRRRVYLCP EPTCVHHDPA RPLGDLTGIK KHFCRKHGEK KWKCDKCSKR YAVQSDWKAH  180
SKICGTREYR CDCGTLFSRR DSFITHRAFC DALAQESARL PPTELSGFAA GHLYGATSAA  240
NMALSLSQVG SHLASSLQDA HGHHHASPDI LRFGGGGGMA ARLDHLLSSS SASAFRPLPP  300
PQASGFLLGT AQEFGDGGDG NGPHAFLQGK PFHGLMQLPG LQGNGSGGPS SSAPSLFNFG  360
YIANSANSSG TSSHGHASQG HMTNDQFSEG GGGAGSETSA AALFSAGGNF AGGDHQVAPA  420
GMYNEQAVML PQMSATALLQ KAAQMGSSTN TNGGGSVFGG FMGSSTPSIQ HGRAPMADQG  480
QMHLHNLMNS LAGGGNGGGM FGGSMIDPRL YDMEHEVKFS QGRGGGDVTR DFLGVGVGGV  540
MRGMSVARGE HHSGRSGMSS LEAEMKLASS SFNNGGRMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-34158220365Zinc finger protein JACKDAW
5b3h_F1e-34158220365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004070G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206030.0AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.20.0INDETERMINATE-related protein 10
TrEMBLA0A1E5V9G20.0A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGMLOC_60958.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-104indeterminate(ID)-domain 4