PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004097G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 248aa    MW: 27406 Da    PI: 7.0834
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004097G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.5e-152974148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T+ E+ +++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  PH01004097G0070 29 RGNFTPHEEGIIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 74
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.24123IPR017877Myb-like domain
SuperFamilySSF466894.67E-211082IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-101034IPR009057Homeodomain-like
PROSITE profilePS5129423.4432478IPR017930Myb domain
SMARTSM007172.4E-132876IPR001005SANT/Myb domain
PfamPF002491.8E-132974IPR001005SANT/Myb domain
CDDcd001672.82E-103174No hitNo description
Gene3DG3DSA:1.10.10.601.8E-203579IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGTGGLMR CSKSCRLRWT NYLRPGIKRG NFTPHEEGII IHLQALLGNK WAAIASYLPQ  60
RTDNDIKNYW NTHLKKKVKR LQAQPDHSFQ NSTAPNVAVS PNYYNPRSTH QSLEAMQSMA  120
YPSTTTCSTA ASDEAATISK LFQTWMKPSP TAATNYKAMA AMQEFQEYQE GAAVSITNCK  180
DHIVINDDKS LSSEMVAPVM GRGEADYSST TATFSLLENW LIDDMPEQAM DGLMEISAGC  240
CADPIMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-18107840108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004097G0070
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0838817e-93BT083881.1 Zea mays full-length cDNA clone ZM_BFb0050H17 mRNA, complete cds.
GenBankEU9555507e-93EU955550.1 Zea mays clone 1536772 mRNA sequence.
GenBankKJ7276117e-93KJ727611.1 Zea mays clone pUT5518 MYB transcription factor (MYB61) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979484.11e-111transcription factor MYB30
SwissprotB3VTV72e-56MYB60_VITVI; Transcription factor MYB60
TrEMBLK3ZJI01e-110K3ZJI0_SETIT; Uncharacterized protein
STRINGSi026733m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-54myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]