PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004165G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 280aa    MW: 29621.1 Da    PI: 8.3022
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004165G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.6e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W++eE+ l++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qk+
  PH01004165G0090 122 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 166
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.403115171IPR017930Myb domain
SuperFamilySSF466894.79E-17116172IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-17118170IPR006447Myb domain, plants
SMARTSM007178.5E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-10119162IPR009057Homeodomain-like
PfamPF002491.3E-10122165IPR001005SANT/Myb domain
CDDcd001672.00E-9122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MARKCSHCGN YGHNSRTCST GQREIMICEG GSSSGGSGGG SSGLRLFGVQ VHVAAGAGAS  60
MKKSYSMDCL QLAAPSSLVS PSSSSSSSLL LSIDEGLERA SNGYLSDGPH GRVVQERKKG  120
VPWSEEEHRL FLVGLEKLGK GDWRGISRSY VTTRTPTQVA SHAQKFFLRQ SSMGKKKRRS  180
SVFDMVPICE NGVSVSEPLN SGEGASTSLS LNMSRHESSK RAAIDLNSTE EDDKVDVSSA  240
SGASARPFPV VLMEQPSHGH HCNPLDLELG MSLSTPSIGT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004165G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002330.0FP100233.1 Phyllostachys edulis cDNA clone: bphyem118l12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184061.11e-130transcription factor SRM1-like
TrEMBLA0A0A9K2J01e-140A0A0A9K2J0_ARUDO; Uncharacterized protein
STRINGTraes_3B_AE7851A5F.11e-128(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-45MYB_related family protein