PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004186G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CPP
Protein Properties Length: 496aa    MW: 54697.7 Da    PI: 8.1722
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004186G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.56.4e-1467107142
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                      k+kk+CnC++s+Clk+YCeCfaag +C+  C+C++C N+ e+
  PH01004186G0090  67 KKKKHCNCRNSHCLKLYCECFAAGLYCDG-CNCKECGNNVEN 107
                      589**************************.********9875 PP
2TCR50.34.6e-16152191140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  PH01004186G0090 152 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 191
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.0E-1367107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.04968192IPR005172CRC domain
PfamPF036389.6E-1169104IPR005172CRC domain
SMARTSM011146.0E-19152193IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12155190IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MEQEKQQQVQ PPAPAPAPAT EPKVAALPPQ PKPAASVQPV TPAPRPWPVA FTPMKPVVEM  60
KSGTPTKKKK HCNCRNSHCL KLYCECFAAG LYCDGCNCKE CGNNVENENA RQEAINSTKQ  120
RNSKAFQPKI ENGSNTLSVR KDGAGAPPSL PKHNKGCHCK KSGCLKKYCE CFQANILCSK  180
NCKCMDCKNF EGSEELRAII QGDIPSDRNN VQQAANVALN GAIGSSGYRC SPARRKRPPE  240
DSFGQRLNGE RSMMRTQFQE ANHVDASQVA SSTGPEGCIG NYQSKSKSYR SPLANTIHLT  300
DVNDLTKHLV IVCRKAAEAF LTIADNKMEM DEEREIYTNG DLNNEKCKKQ EVQKAAASQP  360
DSVAYIDQWN AADFESRCSN TQEDSRPASP GTQALMCDEQ GTAFETDYRS SFPAALHDQD  420
TSELNALQEK AVLTGFRDYL RILITRGKIN GSKYRVKSRW AAGNGYRLEI LKDISWLAPL  480
TINEIFAILA HYDEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-27622014132Protein lin-54 homolog
5fd3_B1e-27622014132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004186G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753297.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLI1GYE30.0I1GYE3_BRADI; Uncharacterized protein
STRINGBRADI1G40407.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-84Tesmin/TSO1-like CXC domain-containing protein