PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004207G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 264aa    MW: 28552.3 Da    PI: 10.1959
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004207G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13120164347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+ eE+ l++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qk+
  PH01004207G0080 120 PWSVEEHRLFLVGLEKLGKGDWRGISRSFVTTRTPTQVASHAQKF 164
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.718113169IPR017930Myb domain
SuperFamilySSF466892.34E-16114169IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-16116168IPR006447Myb domain, plants
SMARTSM007171.5E-9117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-10117160IPR009057Homeodomain-like
PfamPF002495.2E-10120163IPR001005SANT/Myb domain
CDDcd001671.20E-8120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MARRCSHCGS YGHNSRTCCV VTAGHRDDDA MRCEGAAGLR LFGVQLHAAA AGANSPAALQ  60
LQKSFSTDCL QLQASPSLAS LLPSSLLLPI DEGSERATDG YLSDGSHGGV ALRGRKKGVP  120
WSVEEHRLFL VGLEKLGKGD WRGISRSFVT TRTPTQVASH AQKFFLRQKP QNSVGKKNNK  180
RRSSLFDMVQ NCEVGRPTVS DRSNFKATST PLPLKSMPID RTRPSSEASV PVITEQAHRY  240
SRHHFSQLDL ELGMPLSTPS IGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004207G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961036.31e-82transcription factor SRM1
TrEMBLK3Z7V42e-81K3Z7V4_SETIT; Uncharacterized protein
STRINGPavir.J35324.1.p3e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49323066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.17e-42MYB_related family protein