PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004235G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 903aa    MW: 101968 Da    PI: 6.9095
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004235G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.75.2e-54121282117
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      ++e ++rwlk++e+++iL+n+e++ ++++++++p+sgs++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++ve+l+cyYah+++n  f
  PH01004235G0060  12 QQEvNARWLKPKEVLQILQNHEQFVVAQKTPHKPPSGSWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVEALNCYYAHADKNGRF 105
                      566789**************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylev 117
                      qrr+yw+L+ ++e+ivlvhy++v
  PH01004235G0060 106 QRRIYWMLDPAYEHIVLVHYRDV 128
                      *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.6658134IPR005559CG-1 DNA-binding domain
SMARTSM010761.3E-6511129IPR005559CG-1 DNA-binding domain
PfamPF038598.1E-4815128IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.203.3E-15234271IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:2.60.40.101.9E-6312397IPR013783Immunoglobulin-like fold
CDDcd001023.34E-5312397No hitNo description
SuperFamilySSF812962.17E-14313395IPR014756Immunoglobulin E-set
PfamPF018334.6E-4313389IPR002909IPT domain
CDDcd002041.58E-8519598No hitNo description
PfamPF136371.2E-8551603No hitNo description
SuperFamilySSF484031.09E-14551644IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.671554614IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.3E-15554646IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.487582614IPR002110Ankyrin repeat
SMARTSM002487.9E-4582611IPR002110Ankyrin repeat
SMARTSM0001530703725IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.053704733IPR000048IQ motif, EF-hand binding site
SMARTSM000150.016748770IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.663749778IPR000048IQ motif, EF-hand binding site
PfamPF006120.03750770IPR000048IQ motif, EF-hand binding site
SMARTSM000155.5771793IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.718772800IPR000048IQ motif, EF-hand binding site
PfamPF006120.21776793IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 903 aa     Download sequence    Send to blast
MQQQGFDIQK LQQEVNARWL KPKEVLQILQ NHEQFVVAQK TPHKPPSGSW FLFNRRVLRY  60
FRNDGYEWRK KKNGKTIAEA HERLKVDNVE ALNCYYAHAD KNGRFQRRIY WMLDPAYEHI  120
VLVHYRDVRE GSISVSALND SSTSNQNGSA SRAEAHSSPG LTSEFIAPCL NSCSPGSAEE  180
VSSQIVTINN ETNNTSRSDW IQHCTQAALR KLKMQLSLED NEHRDVNTKE VLSNNEPILV  240
HGIQNEEPDT CRNLVDFGLE FSEDNHTEET GTHPYPNAID VLKNSDTWLE EDQLEAILHS  300
TSLTVIENQW FRIHEVSPEW AFCSESTKVM IAGDFLCNPS NGSWAILFGD VKVPVEIVQQ  360
GVIRCHTPCL DAGKVSMCMI DGSGKPCSET REFEFHEKPT KNMIDGNGKP CSEARESEFH  420
QKPTKSNDEL LLLLNYVQML KPCSEARESE FHQKPTKSND ELLLLLNYVQ MFFDGHDRGL  480
FWKFRLTLPN LECGLQVSPL EIINKSRQQL DYEDTVNCVM EILLNNKFEH WLSSKCEQNS  540
EGNQLLPKQY HGVIHTIAAL GYDWALKPLL SSGVPINYRD ANGWTALHWA ARFGREEIVV  600
VLLAAGAAAG ALSDPTSEDP AAKTPALIAS AYGFKGLSAF LSEAELTTHL HSLESKENGN  660
RSDHACGEGI SSAVDRISDK FAHVQGGTDD QLAIKDSLGA TRNAVQAAGR IQAAFRMFSF  720
RKKQEMALQN RDSYTLSIRG AGGAPRAMLE KAALSIQTNF RCWKKRKEFQ KMRKDVNKIQ  780
ARVRAHQERN KYKELLQSVG VLEKVMLRWF RKGVGLRGFN SGAMPIDAEE EDDIVRVFRK  840
QRVETALNEC RGFPEAKSGN SSERSCFEGI IHHWLPYCKT AVPKDARKIP TSKGETMNYG  900
IY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004235G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645250.20.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A0D9V9P40.0A0A0D9V9P4_9ORYZ; Uncharacterized protein
STRINGLPERR01G36780.20.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94073440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-106Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains