PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01004326G0140

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

SRS

Protein Properties

Length: 257aa MW: 26250.7 Da PI: 7.449

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004326G0140	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.1	4e-67	10	186	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsals 87 +sg+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq + + s +++ ++ +++ask++r ++q+++s PH01004326G0140 10 GSGATTCQDCGNQAKKDCGHNRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLAVSGSVSSSPATactaaaaaSASASKKPR--LLSSQTTTS 101 57889*********************************************99877655443333335677644444455555..56999999 PP DUF702 88 stklssaeskkeletss..................lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t++s+a+++++++t+s lP++v+++avf+cvrv+s+ dge+e+aYq+ v+i+GhvfkG+LydqG+++ PH01004326G0140 102 HTSTSNATTPRSFDTTSshqgnadddildasfresLPRHVRAPAVFKCVRVTSIADGEDEYAYQAMVTINGHVFKGFLYDQGVDD 186 ************9999**************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-62	13	185	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.9E-27	15	57	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.1E-27	137	184	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MLDSGGGSSG SGATTCQDCG NQAKKDCGHN RCRTCCKSRG FDCSTHVKST WVPAARRRER 60 QQLAVSGSVS SSPATACTAA AAASASASKK PRLLSSQTTT SHTSTSNATT PRSFDTTSSH 120 QGNADDDILD ASFRESLPRH VRAPAVFKCV RVTSIADGED EYAYQAMVTI NGHVFKGFLY 180 DQGVDDGRLA ATSNDDSTAG VPNISELHLG GASVSSLGGN AVKEGGSSMV PSDLYGVSGG 240 GGPHILGGSS YGNTMN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004326G0140

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	7e-99	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818814.1	1e-120	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	3e-63	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2T7DBH9	1e-119	A0A2T7DBH9_9POAL; Uncharacterized protein
STRING	Pavir.Eb03954.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	2e-54	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]