PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004339G0170
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 232aa    MW: 25658.6 Da    PI: 5.0735
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004339G0170genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-192577456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     + +f++eq++ Le++F+ + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  PH01004339G0170 25 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 77
                     456*************************************************9 PP
2HD-ZIP_I/II1231.5e-3924115293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y++L++ ydal  + e+L+ke+++L ++l++
  PH01004339G0170  24 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSVLRDDYDALLCSYESLKKEKHALLKQLEK 115
                      8**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-191181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.4E-201686IPR009057Homeodomain-like
PROSITE profilePS5007117.4271979IPR001356Homeobox domain
SMARTSM003896.9E-162283IPR001356Homeobox domain
CDDcd000861.34E-162480No hitNo description
PfamPF000467.0E-172577IPR001356Homeobox domain
PRINTSPR000317.4E-65059IPR000047Helix-turn-helix motif
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PRINTSPR000317.4E-65975IPR000047Helix-turn-helix motif
PfamPF021832.9E-1379121IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEGEEEGEWM MDVPGGKDRK GVDRKKRFSE EQIKSLESMF ATQTKLEPRQ KLQLARELGL  60
QPRQVAIWFQ NKRARWKSKQ LEREYSVLRD DYDALLCSYE SLKKEKHALL KQLEKLAEML  120
QEPQGKYGDN ADGGGAGDDV HSGVAGMKEE LVDAGAALYS VEGGGGKLSH LGDDDAGLFL  180
RPSSQPAHAA SGITASGPAE HQSSFQFHSS WPSPAEQTCS SSQWWEFEPL S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004339G0170
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183573.11e-115uncharacterized protein LOC100502166
SwissprotQ651Z51e-104HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH351e-104HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A0A9CR231e-115A0A0A9CR23_ARUDO; Uncharacterized protein
STRINGGRMZM2G041462_P011e-115(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78733448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-42homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]