PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004360G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 165aa    MW: 18174.4 Da    PI: 8.7145
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004360G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-101945127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C ++ ++G CkyG +CkF+H+p
  PH01004360G0140 19 PRRPDCTYYVKFGSCKYGMNCKFNHPP 45
                     589**********************97 PP
2zf-CCCH18.24.6e-067499126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C+++ ++G CkyG + kF+H+
  PH01004360G0140 74 PGEPDCSYYVKFGSCKYGMNRKFNHP 99
                     5789**************88888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.22E-61847IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9621846IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-41945IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-82045IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-42444IPR000571Zinc finger, CCCH-type
SMARTSM003560.4573100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.55973101IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
APAGEKHEEE LAAAEPEYPR RPDCTYYVKF GSCKYGMNCK FNHPPKTSRW PAPAGEKQQE  60
PEEAAAEPEY PRRPGEPDCS YYVKFGSCKY GMNRKFNHPL RKLVAKGSGN VGGGTNSSNG  120
NEASSSQYKQ VTGPSVLLSL HRLCSMHVCL HVLWKSYCGR GQNS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004360G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641849.14e-25zinc finger CCCH domain-containing protein 43
RefseqXP_025882269.14e-25zinc finger CCCH domain-containing protein 43
SwissprotQ5Z5Q33e-26C3H43_ORYSJ; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0A9CJF83e-35A0A0A9CJF8_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2234747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-11floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]