PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004366G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 214aa    MW: 23581.2 Da    PI: 8.1999
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004366G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-18352857
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k
  PH01004366G0040  3 SPYQLEVLEKTYAVEQYPSETLRAELSTKIGLSDRQLQMWFCHRRLKDRK 52
                     789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.0E-9157IPR001356Homeobox domain
PROSITE profilePS5007115.175153IPR001356Homeobox domain
CDDcd000864.33E-14253No hitNo description
Gene3DG3DSA:1.10.10.608.6E-16352IPR009057Homeodomain-like
SuperFamilySSF466898.55E-15352IPR009057Homeodomain-like
PfamPF000461.6E-15352IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKSPYQLEVL EKTYAVEQYP SETLRAELST KIGLSDRQLQ MWFCHRRLKD RKPPSKRQRR  60
DEEAAAAPVM APPPVLPPPA MPLASSELMM GAASPYDEPL PPTHSLPPTH SRRGARRSSA  120
VPRISAPDIG RRYYEPLPVM LPPPVAPMQL TQAELRVINS VESQLGEALR EDGPVLGIEF  180
DPLPPGAFGA PIGSGNKMAW DVKECLYNNV NQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004366G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566982.11e-90homeobox-DDT domain protein RLT2
TrEMBLA0A3B6FNT32e-91A0A3B6FNT3_WHEAT; Uncharacterized protein
TrEMBLA0A3B6FS382e-91A0A3B6FS38_WHEAT; Uncharacterized protein
TrEMBLA0A446PV483e-95A0A446PV48_TRITD; Uncharacterized protein
TrEMBLA0A446PV779e-92A0A446PV77_TRITD; Uncharacterized protein
TrEMBLA0A446PVA02e-91A0A446PVA0_TRITD; Uncharacterized protein
STRINGBRADI2G46230.14e-90(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1674079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.18e-38Homeodomain-like transcriptional regulator