PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004374G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 89aa    MW: 9747.79 Da    PI: 9.0779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004374G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.9e-101761344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +W+t E +l+ +a + +G g   +W +++r mg  +t+ +++ ++
  PH01004374G0040 17 AWSTKENKLFEEALAYYGEGtpdRWQKVSRAMGGSKTADEVRRHY 61
                     7********************************99*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1311065IPR017877Myb-like domain
SMARTSM007173.4E-71467IPR001005SANT/Myb domain
SuperFamilySSF466891.05E-121673IPR009057Homeodomain-like
CDDcd001675.76E-61761No hitNo description
PfamPF002492.9E-81761IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-41763IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSSGSRSSSR NANAASAWST KENKLFEEAL AYYGEGTPDR WQKVSRAMGG SKTADEVRRH  60
YEILVDDVKL IESGRLPFPK YSTQGACN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2518851177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004374G0040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935931e-126FP093593.1 Phyllostachys edulis cDNA clone: bphylf056b16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.11e-44protein RADIALIS-like 3
SwissprotF4JVB86e-26RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLI1HQ423e-43I1HQ42_BRADI; Uncharacterized protein
STRINGBRADI2G45770.14e-44(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-26RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]