PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004450G0140
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 386aa    MW: 41346.3 Da    PI: 9.4189
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004450G0140genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY537e-172252622158
                      -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY  21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       rsYY+Cts++C++kk+ve+s++dp+++++tYeg+H h
  PH01004450G0140 225 HRSYYKCTSSRCSAKKHVEKSTDDPEMLIVTYEGSHLH 262
                      59**********************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0136712.39649218IPR000218Ribosomal protein L14P
SMARTSM013741.5E-1169163IPR000218Ribosomal protein L14P
Gene3DG3DSA:2.40.150.208.4E-2175146IPR000218Ribosomal protein L14P
SuperFamilySSF501935.76E-2176146IPR000218Ribosomal protein L14P
PfamPF002385.9E-1477146IPR000218Ribosomal protein L14P
PROSITE patternPS000490116142IPR019972Ribosomal protein L14P, conserved site
PfamPF031061.6E-12224262IPR003657WRKY domain
SMARTSM007742.6E-8224264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-15225263IPR003657WRKY domain
SuperFamilySSF1182901.12E-12225264IPR003657WRKY domain
PROSITE profilePS5081116.053226265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MAAREKPMRT KRTGESSVAW CDWTAGMKSA TWPRGQGEIL RLLNRPEDLL PRLRSLAAVA  60
ATAATGPLRI ARASPFISVK GIKGRLNRLP SACVGDMVMP NVKKGKPDLR KKVMPAVIVR  120
QRKPWHRKDG VYMYFEDNVG VIVLEPGGGS GWRAAIGLAG RLVGVEVGEI RGVVSLLFLD  180
LCMMALDLDG GRLAQVGSGG DAWWRSSLHW LDLATRKYCG VVLEHRSYYK CTSSRCSAKK  240
HVEKSTDDPE MLIVTYEGSH LHGPQPLFPH LQSSVDFSGA ADDVYEAVAK KARPSPTSDD  300
GAGAGGFGGQ PGPSKETCDA VVRGSKLQGR QKGRAEDAVP RATTDSCDGS ASSAPHADAA  360
TVFSPAPPTN WSCLDSPWSP EALFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_LM2e-365914322106Ribosomal Pr 117
4v7e_CV2e-36591432210660S ribosomal protein L14
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004450G0140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016161e-128FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014753904.11e-43probable WRKY transcription factor 20 isoform X1
TrEMBLA0A0Q3GJF33e-42A0A0Q3GJF3_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.26e-12WRKY DNA-binding protein 57