PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01004496G0070

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

bZIP

Protein Properties

Length: 351aa MW: 37394.4 Da PI: 5.3214

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004496G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.3	1.6e-13	276	326	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L + ++ ++ PH01004496G0070 276 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNEELERKQAKIMEM 326 79************************************9998776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.7E-14	271	323	No hit	No description
SMART	SM00338	5.8E-10	272	330	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.806	274	325	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.38E-10	276	323	No hit	No description
Pfam	PF00170	1.8E-11	276	326	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.17E-25	276	330	No hit	No description
PROSITE pattern	PS00036	0	279	294	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MEFKNGGSLS ERRAAVAEGA PLARQGSVYS LTFDEFQSAL GGAGCSGFGK DFGSMNMDEL 60 LRSIWTAEES QAMASTAGLG MGAGPPPAPL QHQGSLTLPR TLSAKTVDEV WRNLVRDEPP 120 PVGADGGEPQ PQQRVTPQQR VTLGEMTLEE FLVRAGVVQE NPTAAPQPMP PRPVPVAPKS 180 TAFYGNFPSA NDAAGAAALG FAPVGMADLA LGNGLMPRAV GLGGSAVAVQ TAVNQLDSGG 240 KGNGDLSSPT EPMPYSFEGI VRGRRNGGGV EKVVERRQRR MIKNRESAAR SRARKQAYTM 300 ELEAEVQKLK ELNEELERKQ AKIMEMEKSE TFISLLIYQY DVVSSLLILY *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MEFKNGGSLS ERRAAVAEGA PLARQGSVYS LTFDEFQSAL GGAGCSGFGK DFGSMNMDEL  60
LRSIWTAEES QAMASTAGLG MGAGPPPAPL QHQGSLTLPR TLSAKTVDEV WRNLVRDEPP  120
PVGADGGEPQ PQQRVTPQQR VTLGEMTLEE FLVRAGVVQE NPTAAPQPMP PRPVPVAPKS  180
TAFYGNFPSA NDAAGAAALG FAPVGMADLA LGNGLMPRAV GLGGSAVAVQ TAVNQLDSGG  240
KGNGDLSSPT EPMPYSFEGI VRGRRNGGGV EKVVERRQRR MIKNRESAAR SRARKQAYTM  300
ELEAEVQKLK ELNEELERKQ AKIMEMEKSE TFISLLIYQY DVVSSLLILY *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004496G0070

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB362818	1e-161	AB362818.1 Triticum aestivum Wabi5-1 mRNA for basic region leucine zipper protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612550.1	1e-154	bZIP transcription factor TRAB1-like
Swissprot	Q6ZDF3	1e-109	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A0D9XEG6	1e-157	A0A0D9XEG6_9ORYZ; Uncharacterized protein
STRING	LPERR09G09170.1	1e-157	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP706	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19290.2	6e-37	ABRE binding factor 4

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]