PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004514G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 358aa    MW: 37576.9 Da    PI: 8.0491
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004514G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.3e-33175232259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H h+
  PH01004514G0080 175 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSFQDPAVVITTYEGKHAHP 232
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-35159234IPR003657WRKY domain
SuperFamilySSF1182902.75E-29166234IPR003657WRKY domain
PROSITE profilePS5081132.374169234IPR003657WRKY domain
SMARTSM007742.4E-39174233IPR003657WRKY domain
PfamPF031063.4E-26175232IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSGEFQFQDE LASLFAQRPV AGDAAGMQQQ APASWFTDYL QAGTPMAMDY DSLCRALEPP  60
VVEDVVKREM VVDTAGGAAR TPSGGGTAPL TPNTTSSSSS EAGGGGGGPG AGEGDSAGRC  120
KEGEESKEEL GKGEEEGDKS KKGAAAAKGA KGKGEKRQRQ PRFAFMTKSE VDHLEDGYRW  180
RKYGQKAVKN SPYPRSYYRC TTQKCPVKKR VERSFQDPAV VITTYEGKHA HPIPATLRGS  240
TYLLAAQAAH LHHHGHQPGG HLGTPPALLP QMGAGSPFGR SGGGIDGLGL VPRGNHAMPP  300
MSGHAPHGLG GAISSVATTT TSPPSLQMQH LMAQDFGLLQ DMLPYFIHNT NSSSNQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-28165235878Probable WRKY transcription factor 4
2lex_A4e-28165235878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004514G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1008330.0FP100833.1 Phyllostachys edulis cDNA clone: bphyem102p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969457.11e-118probable WRKY transcription factor 48
TrEMBLA0A446PV551e-124A0A446PV55_TRITD; Uncharacterized protein
STRINGTraes_3B_283845875.21e-123(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-50WRKY DNA-binding protein 71