PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004616G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 413aa    MW: 46752.9 Da    PI: 5.3862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004616G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.000494467223
                     EETTTTEEESSHHHHHHHHHH..T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                     +C dCgk+++++ +   H ++  H
  PH01004616G0090 44 VCADCGKPCRSQTEVDLHTKRtgH 67
                     7***************99998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF469341.66E-15102165IPR009060UBA-like
Gene3DG3DSA:1.10.8.101.1E-9103157No hitNo description
CDDcd142902.57E-19111159No hitNo description
PROSITE profilePS5003010.619111152IPR015940Ubiquitin-associated domain
SMARTSM001650.0098113151IPR015940Ubiquitin-associated domain
PfamPF006278.9E-5114149IPR015940Ubiquitin-associated domain
SuperFamilySSF1435031.83E-27303409IPR018997PUB domain
CDDcd104614.12E-64307413No hitNo description
PfamPF094091.8E-23320391IPR018997PUB domain
SMARTSM005804.6E-23323386IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAGLSLRCGD CGMLLRSVEE AQAHAEATSH ANFSESTDAV LNLVCADCGK PCRSQTEVDL  60
HTKRTGHTEF TDQTMEAAKP IDLEAPQKPA SDSMDVDASG SGEPQEMVVP EVNKEMLVDL  120
EGMGFTTARA TRALHFSGNS TIEGAINWLS EHQEDPDIDE MPLVPANVKT EANKPSLTPE  180
EMKLKAQELR ERARKKKEEE ERRMEREREK ERIRIGKELL EAKRMEEENE RKRMIELRRL  240
EKEEEKRARE KIRQKLEEDK AERRRKLGLP PEDPAAAKPS TPPPVEEKKS ALPVRPATKA  300
EHMRDCLRNL KQQNKDDDAK VKRAFQTLLT YIGNVARNPD EEKFRKIRLS NATFQDRVGN  360
LHGGIEFLEL CGFEKLEDNE FLFLARDKVD KAVLNTAGAE LNSAITNPFF GVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004616G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0942620.0FP094262.1 Phyllostachys edulis cDNA clone: bphylf035k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815335.10.0chromatin assembly factor 1 subunit A
TrEMBLA0A0D9VG800.0A0A0D9VG80_9ORYZ; Uncharacterized protein
STRINGLPERR02G14040.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517