PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004633G0110
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 229aa    MW: 24955.8 Da    PI: 8.2977
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004633G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.3e-1892146256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tkeq + Le+ F+ ++ +s+++++eLA++l+L+ rqV vWFqNrRa+ k
  PH01004633G0110  92 RKKLQLTKEQSTLLEDSFRVQNILSHAQKQELARQLNLSARQVEVWFQNRRARTK 146
                      778899***********************************************98 PP
2HD-ZIP_I/II1149.3e-3792180189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk++l+keq++lLE+sF+ ++ L++ +K+elar+L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++e  eL++
  PH01004633G0110  92 RKKLQLTKEQSTLLEDSFRVQNILSHAQKQELARQLNLSARQVEVWFQNRRARTKLKQTEVDCESLKRCCESLTDENQRLKHELMELQR 180
                      69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575119No hitNo description
Gene3DG3DSA:1.10.10.604.2E-1973146IPR009057Homeodomain-like
SuperFamilySSF466893.38E-1977149IPR009057Homeodomain-like
PROSITE profilePS5007117.52488148IPR001356Homeobox domain
SMARTSM003899.4E-1590152IPR001356Homeobox domain
PfamPF000466.2E-1692146IPR001356Homeobox domain
CDDcd000861.96E-1392149No hitNo description
PROSITE patternPS000270123146IPR017970Homeobox, conserved site
SMARTSM003403.5E-15148191IPR003106Leucine zipper, homeobox-associated
PfamPF021835.7E-10148179IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MEEEDRGAWL GLGIGGGGCA PRRSHGERRP SVQLDVLFPQ HVKEEGGCDH EQAVNKKGGK  60
GARQRIKIGD DGRSHGASPS DGGNDGSDGG TRKKLQLTKE QSTLLEDSFR VQNILSHAQK  120
QELARQLNLS ARQVEVWFQN RRARTKLKQT EVDCESLKRC CESLTDENQR LKHELMELQR  180
SAAAAAAGSQ LYVQFPRSTE MVNFCPSCEK ATVISGGEMS SKSSSSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140148RRARTKLKQ
2154159ESLKRC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004633G0110
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966133.12e-90homeobox-leucine zipper protein HOX18
SwissprotQ5Z6F67e-69HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLA0A368QXX75e-89A0A368QXX7_SETIT; Uncharacterized protein
STRINGSi007238m1e-89(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-42HD-ZIP family protein