PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004739G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 116aa    MW: 13310.7 Da    PI: 10.2623
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004739G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.9e-16231001798
                      E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +p  f++e+   +++sk+l+l d++g+ Wev++ y   ++   +++GW++F+  n+L+  D+++F+l   ++ + +v+++r
  PH01004739G0010  23 KIPSGFVRECL--PRTSKKLILWDPQGKAWEVNYVYYSDRCVGSFSGGWSKFALGNNLEKYDVCIFELF--MKDNIKVHIYR 100
                      59999***996..46789****************997777777899*********************75..45566888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.4E-614102IPR003340B3 DNA binding domain
PfamPF023623.0E-1423100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-2023100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-1923100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.85724102IPR003340B3 DNA binding domain
CDDcd100173.92E-1924100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MPIASAQSHP LHRLRRLIAL PKKIPSGFVR ECLPRTSKKL ILWDPQGKAW EVNYVYYSDR  60
CVGSFSGGWS KFALGNNLEK YDVCIFELFM KDNIKVHIYR VVPEITPYLP GSRKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004739G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576206.12e-49B3 domain-containing protein Os11g0197600 isoform X1
RefseqXP_010237857.13e-49B3 domain-containing protein Os11g0197600 isoform X2
SwissprotQ2R9D24e-49Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A0E0MDJ12e-48A0A0E0MDJ1_ORYPU; Uncharacterized protein
TrEMBLA0A2K2CPR26e-48A0A2K2CPR2_BRADI; Uncharacterized protein
TrEMBLI1IMS66e-48I1IMS6_BRADI; Uncharacterized protein
STRINGBRADI4G23270.11e-48(Brachypodium distachyon)
STRINGOPUNC11G05820.13e-49(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]