PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004866G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 542aa    MW: 60045.5 Da    PI: 5.9183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004866G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.71.3e-1321715401373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++d  +++ l+++l +l+s +gdpmqRl ay++e+L arl++s+s++yk+l+++e +   sse +++++l++e++P++kf+
  PH01004866G0030 171 LKQVIIACGKAVAENDVFRTELLISELGQLVSVSGDPMQRLGAYMLEGLVARLSSSGSKIYKSLKCKEPT---SSELMSYMHLLYEICPFYKFG 261
                      57899****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++++s+  +   l  +g rL ++ +++g+pfefn+ v  + 
  PH01004866G0030 262 YMSANGAIAEAIKGENLVHIIDFQIAQGSQWVTLIQALAARPGGPPCLRITGIDDSNSFyaRGGGLDIVGMRLCNVSQSCGLPFEFNA-VPAAS 354
                      *******************************************************999999999************************.7999* PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      ++++le+L+++pgE++aVn+++qlh+++desvs+e++rd++L+++kslsP+vv++veqe+++n+++F+ r le+l+yy+a+f+s++a lpr+++
  PH01004866G0030 355 HEVHLEHLDIRPGEVIAVNFAYQLHHTPDESVSTENHRDRILRMIKSLSPRVVTLVEQESNTNTAPFFPRYLETLDYYTAMFESIDAALPRDDK 448
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       ri+ E+++++r+ivn++acegaer+erhe ++kW++r+++aGF+p+pls+ +++++++ll+ ++s  yr+ee++g l+lgWk+r Lv+ SaW
  PH01004866G0030 449 RRISAEQHCVARDIVNLIACEGAERVERHELYGKWKARFQMAGFQPYPLSSVVNNTIRTLLHSYHSY-YRLEERDGVLYLGWKNRVLVVSSAW 540
                      *****************************************************************66.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.914145522IPR005202Transcription factor GRAS
PfamPF035144.6E-130171540IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MSAKASNHTY RCSDDSQMAY YNNSVPLGEN GRFYIRQDNL GLHYSSDDGS QKISSNPQVF  60
ETQQYCTLES SSANGVYPTQ SSTSSHSISP ISGSPLSQRD SHSDHAHSSP PSASCVTEVA  120
DLQVKLKELE NAILGPELDI ASDSPESSLQ ANIPSIPDNW RQLLGINTGD LKQVIIACGK  180
AVAENDVFRT ELLISELGQL VSVSGDPMQR LGAYMLEGLV ARLSSSGSKI YKSLKCKEPT  240
SSELMSYMHL LYEICPFYKF GYMSANGAIA EAIKGENLVH IIDFQIAQGS QWVTLIQALA  300
ARPGGPPCLR ITGIDDSNSF YARGGGLDIV GMRLCNVSQS CGLPFEFNAV PAASHEVHLE  360
HLDIRPGEVI AVNFAYQLHH TPDESVSTEN HRDRILRMIK SLSPRVVTLV EQESNTNTAP  420
FFPRYLETLD YYTAMFESID AALPRDDKRR ISAEQHCVAR DIVNLIACEG AERVERHELY  480
GKWKARFQMA GFQPYPLSSV VNNTIRTLLH SYHSYYRLEE RDGVLYLGWK NRVLVVSSAW  540
W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-591735406374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004866G0030
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573869.10.0scarecrow-like protein 21
RefseqXP_010234693.10.0scarecrow-like protein 21
RefseqXP_014756863.10.0scarecrow-like protein 21
RefseqXP_024317186.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0A9EAW10.0A0A0A9EAW1_ARUDO; GRAS54
STRINGBRADI3G24210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]