PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004870G0100
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 348aa    MW: 37364.3 Da    PI: 6.1805
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004870G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.9e-14169218455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                       h ++Er+RR++iN++f eL +++P +   +++  ++Ka+iL  A  Y+k+Lq
  PH01004870G0100 169 DHIIAERKRREKINKRFIELSTVIPGL---KKPIqMDKATILSDAASYVKELQ 218
                      699************************...99999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.742165217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-16168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-12169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17169226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-15170222No hitNo description
SMARTSM003531.6E-14171223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEDSTLFMQW AMDTLQNQQP ASVVDDCGET TFPSLEALRH ASHEAVLVPE LMTEAHAANS  60
WSTGDTTDGG GGGNFSAPAA MEHDVWPPSP NSSRCAPRSS SSGTNLPVTS WNFSAASTQP  120
VTDGMLEATA AAPRPYDSGV PELVYGSAPT RRSSVRSTGP MSSAPHAQDH IIAERKRREK  180
INKRFIELST VIPGLKKPIQ MDKATILSDA ASYVKELQEK LKALEAAGSN GRSIGIETGV  240
LVKKPYLASP DENGSPSLAS SGWPAARNSL PEIEARFSEN SLMMRIHCEN GKGVVVKVFA  300
EVEELHLCII HTNVMLFPVS TVIITIMAKA SLFPLVFFYR HCLSNPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERKRRE
2174179RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004870G0100
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795850.11e-134transcription factor NAI1-like isoform X2
TrEMBLA0A2S3IJF21e-133A0A2S3IJF2_9POAL; Uncharacterized protein
TrEMBLA0A2S3IJF51e-132A0A2S3IJF5_9POAL; Uncharacterized protein
STRINGGRMZM2G120021_P011e-120(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-38bHLH family protein