PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004940G0100
Common NameWRKY10
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 192aa    MW: 20827 Da    PI: 6.1112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004940G0100genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-2995153159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYG+K vk+s++pr+YYrC+++gC vkk+ver+ +dp +v++tY g Hnh 
  PH01004940G0100  95 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCGVKKRVERDGDDPCYVITTYDGVHNHA 153
                      59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3184155IPR003657WRKY domain
SuperFamilySSF1182901.57E-2787155IPR003657WRKY domain
PROSITE profilePS5081130.61890155IPR003657WRKY domain
SMARTSM007743.4E-3495154IPR003657WRKY domain
PfamPF031061.7E-2396152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAASLGLNPE AFFSSCPYSS PFLADYAPKF PAVAADFSAE LDDHRPSEYS PAPVFAGAGD  60
DHNDNDKTMS CESEEKRARV IGRIGFRTRS EVEILDDGFK WRKYGKKAVK NSPNPRNYYR  120
CSTEGCGVKK RVERDGDDPC YVITTYDGVH NHATPGFGAA AAAVLQYAGN YYNPPLSAGS  180
PPSAYSAGSL LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-2782155477Probable WRKY transcription factor 4
2lex_A2e-2782155477Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004940G0100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0984780.0FP098478.1 Phyllostachys edulis cDNA clone: bphyem105p03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006654120.16e-78PREDICTED: probable WRKY transcription factor 51
TrEMBLF4YCW41e-139F4YCW4_9POAL; Putative pathogenesis protein
STRINGOPUNC05G05190.15e-79(Oryza punctata)
STRINGLPERR05G04920.16e-79(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.12e-40WRKY DNA-binding protein 50