PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004959G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HSF
Protein Properties Length: 276aa    MW: 30241.1 Da    PI: 8.4625
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004959G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind95.36.7e-3019104295
                      HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
     HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                      Fl+k+y++++d++++ ++sw  ++ +sfvv+ + efa++vLp+yFkhsnf+SFvRQLn+YgF+kv  e+         weF+++ F+k + e l
  PH01004959G0060  19 FLTKTYQLVDDPATDYVVSWGdDRASSFVVWRPPEFARDVLPSYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKATAEAL 103
                      9********************7778*****************************************999.........********99887766 PP

                      X CS
     HSF_DNA-bind  95 e 95 
                       
  PH01004959G0060 104 M 104
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.7E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.3E-4715109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-2716103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.0E-191942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.9E-2619103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEWESDAPAG QKASVPAPFL TKTYQLVDDP ATDYVVSWGD DRASSFVVWR PPEFARDVLP  60
SYFKHSNFSS FVRQLNTYGF RKVVPERWEF ANEFFRKATA EALMEENERL RRGNAALLQE  120
LAHMRKLYSD IIYFVQNHVR PVAPSPAVLH GLGMGSKQGP AAEARNASGR SATSSSSLTV  180
AEDQPSLALL SRAEKAGTEA AGTISSSRTR PGPTKLFGVN LSIDQTCGAS RKRLLQEQPP  240
TSPEWKRSMV LECDDVRLSV VPPPQPCAVS SPASI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-19610913128Heat shock factor protein 1
5d5v_B1e-19610913128Heat shock factor protein 1
5d5v_D1e-19610913128Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004959G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411901e-72AK241190.1 Oryza sativa Japonica Group cDNA, clone: J065120N14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ67U948e-51HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLA0A0D3H1944e-94A0A0D3H194_9ORYZ; Uncharacterized protein
STRINGOBART08G17760.16e-95(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-52heat shock transcription factor B4