PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005217G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 442aa    MW: 46493 Da    PI: 6.6405
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005217G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1787.1e-551254192291
             GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      ++lL  +Aeav sgd  +a+ +Larl++    p ++++qR+a++f eAL++ la   + l++a +p +++  ++++++ a+++f  +sPi++f+
  PH01005217G0040 125 EQLLRIAAEAVWSGDSVAANGMLARLNQAiPYPPRTSTQRAASHFREALQSLLAAPDQFLAQADHPAPSA-ADVVRRIGAQRAFACLSPIPQFA 217
                      57788899********************9888999********************777777666666665.89********************* PP

             GRAS  95 hltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                       +taNq++lea+e +       HiiDfd++ G+QW ++ ++ a+R+   + +ps+R+T+v+++   ++ e+   +e+L++fA   gv+f ++v+
  PH01005217G0040 218 SFTANQTLLEAFEAAggtsAPFHIIDFDLGLGGQWSSFVEEVAARRlpsQHTPSVRVTAVVHE---ETAETLLAAENLRDFACGHGVRFAIDVV 308
                      *************997655566*********************999888889**********4...577777889******************9 PP

             GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak. 274
                          l +l l ++r+++ Ea+aV l+ +++r l+ + + +s  d++L++++++ P+ vv+v+ e+  ++++ ++ ++++++ ++++++s+ea  
  PH01005217G0040 309 RLGGLGTLALGSIRTSSSEAVAVVLSPAIFRHLAATSADSS--DALLHFIQRTAPHAVVFVDAEVMPGGGDGVASLMRSVQSCAVVMESIEAAa 400
                      889******************************77777777..***********************************************7762 PP

             GRAS 275 ..lpreseerikvErellg 291
                        +++ +e+ + vEr +++
  PH01005217G0040 401 aaIGAGEEAVRRVERGIVR 419
                      2234444666777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.7398441IPR005202Transcription factor GRAS
PfamPF035142.4E-52125419IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MKSSTTTNTK QSPSDSSSPA SHGHHRLCSY EPTSVLDPNA TSSPATGGAA AGHTRPGNQL  60
QNHVQAALPH HPSDDWDALS WLLSPDHKDG AGELFPLQAH RSSVEAPFDV LADPFDPYSP  120
VESYEQLLRI AAEAVWSGDS VAANGMLARL NQAIPYPPRT STQRAASHFR EALQSLLAAP  180
DQFLAQADHP APSAADVVRR IGAQRAFACL SPIPQFASFT ANQTLLEAFE AAGGTSAPFH  240
IIDFDLGLGG QWSSFVEEVA ARRLPSQHTP SVRVTAVVHE ETAETLLAAE NLRDFACGHG  300
VRFAIDVVRL GGLGTLALGS IRTSSSEAVA VVLSPAIFRH LAATSADSSD ALLHFIQRTA  360
PHAVVFVDAE VMPGGGDGVA SLMRSVQSCA VVMESIEAAA AAIGAGEEAV RRVERGIVRP  420
RALAAGRGRR PPCARGGRRR H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-1313144026311Protein SCARECROW
5b3h_A8e-1313144025310Protein SCARECROW
5b3h_D8e-1313144025310Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005217G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010943177.12e-81scarecrow-like protein 15
TrEMBLA0A444EWG51e-79A0A444EWG5_ENSVE; Uncharacterized protein
STRINGXP_008795618.13e-75(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.12e-31GRAS family protein