PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005298G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NF-YC
Protein Properties Length: 160aa    MW: 16671.7 Da    PI: 5.36
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005298G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.34.6e-154012318100
            NF-YC  18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprde 100
                      + +lP+ r+kki+++d+d+++++ ea  l++ a elf+  l++ +   a    rr+++ + + aa  ++  + dfl+d  p  e
  PH01005298G0040  40 RPALPVGRVKKIIRVDQDIRKVTGEAALLIAVATELFLGSLAVGANTAAARRGRRAVRAAHVRAAArAHRPTADFLLDCLPAAE 123
                      668***********************************************************88762566799*****999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.85E-1341122IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.7E-1643120IPR009072Histone-fold
PfamPF008083.3E-1243104IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MAAAAAAAVD DDEPTEAMEQ VEEEERAEAH AEEEAEASLR PALPVGRVKK IIRVDQDIRK  60
VTGEAALLIA VATELFLGSL AVGANTAAAR RGRRAVRAAH VRAAARAHRP TADFLLDCLP  120
AAEEAPRARS AAGSDGAGGE AKPLPRGTRR IDAFFNTVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005298G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457226.12e-44nuclear transcription factor Y subunit C-2
TrEMBLA0A3B6EFW61e-44A0A3B6EFW6_WHEAT; Uncharacterized protein
TrEMBLA0A446N6Y21e-44A0A446N6Y2_TRITD; Uncharacterized protein
STRINGPavir.J40808.1.p6e-45(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-12nuclear factor Y, subunit C13