PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005423G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 599aa    MW: 65517.9 Da    PI: 8.3204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005423G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.5e-12501546655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR +i +++ +L+el+P+     +k  + a++L + v+YIk+Lq
  PH01005423G0060 501 SIAERVRRTKISERIRKLQELVPNM----DKQTNTADMLDLSVDYIKDLQ 546
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142919.6E-144289IPR025398Domain of unknown function DUF4371
PfamPF142911.8E-1590129IPR025398Domain of unknown function DUF4371
PROSITE profilePS5088814.875495545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15498558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.57E-11499550No hitNo description
Gene3DG3DSA:4.10.280.104.2E-15500569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-13501551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-9501546IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MSQAETETVV LVAAPGSSGE GAKPHELSFG FFANRQSPSL FTRVLLKQGL PFRGRDESDE  60
SSSKGNFKEF HAYTAEQNPT VGKVVGNNAL VDESRDVACK EQMAVVLRYV DKCGIVKERS  120
VGLVHLMLTI LIITNTLSLT LQRKDQDIVN AIDCVKSTKN HLDELRRHGW DSVLDEVYVF  180
GYQDICDMYG TSGHFRSGSV PISSRCHMNP KCKELISSFA HWLSAHQLST MPLVVVSSVA  240
TVTNPTFTLN DLRLRPYESQ TIQDKPPAPL PPAATAVHFP DDAAMTSQQQ QQMIFHSQQQ  300
QQQQMDSVEG LYRTVSSTGM DAAAATVGGA GSLIRQSSSP AGFLNHLNMD NGYGSMLRAG  360
MGVGFRNGSN AADSGGGGGG GRLKGQLSFS SRQGSLMSQI SEMGSEELGG SSPEAAGGGR  420
GYIPGYPMSS GWEESSLMSE NLSGMKRPRD SSEPAQNGLA HQFSLSKTSS EMAALEKFLQ  480
FQDAVPCKIR AKRGCATHPR SIAERVRRTK ISERIRKLQE LVPNMDKQTN TADMLDLSVD  540
YIKDLQKQVK AAERLVYQAV YKQRAIEQWH HQGFKWQREK KEGGREGDGR RNNCIVLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005423G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-50bHLH family protein