PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005435G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bZIP
Protein Properties Length: 158aa    MW: 17471.7 Da    PI: 9.4887
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005435G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.22.1e-143184356
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                     e kr rrk++NR++ArrsR RK++ ++ L+  v +L+++N++L   l++ +++ 
  PH01005435G0020 31 EKKRKRRKESNRVSARRSRMRKQQHLDDLTSQVNQLKNQNQQLSMALSMATQNL 84
                     679****************************************99888877765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-122583No hitNo description
SMARTSM003382.5E-152993IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.3123194IPR004827Basic-leucine zipper domain
PfamPF001702.3E-113178IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.76E-123386No hitNo description
CDDcd147021.30E-153482No hitNo description
PROSITE patternPS0003603651IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MTMSSETSSG SSQGTRSSRS EDDLNLQAQM EKKRKRRKES NRVSARRSRM RKQQHLDDLT  60
SQVNQLKNQN QQLSMALSMA TQNLVAVQAQ NSVLQTQAME LESRLCALSE ILLCMSSITN  120
TTSAATNPAT MRITTSSACD IFGTSTWSQP IDLYQCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136KKRKRR
23137KKRKRRK
33237KRKRRK
43338RKRRKE
54552RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005435G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649031e-108AK064903.1 Oryza sativa Japonica Group cDNA clone:J013000L18, full insert sequence.
GenBankAK0723601e-108AK072360.1 Oryza sativa Japonica Group cDNA clone:J023058F04, full insert sequence.
GenBankAK0988691e-108AK098869.1 Oryza sativa Japonica Group cDNA clone:J013001A19, full insert sequence.
GenBankCT8330391e-108CT833039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA019A05, full insert sequence.
GenBankCT8330401e-108CT833040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577967.11e-74bZIP transcription factor 44
TrEMBLI1IP943e-73I1IP94_BRADI; Uncharacterized protein
STRINGBRADI4G27720.14e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.12e-16basic leucine-zipper 44