PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01005460G0120

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB

Protein Properties

Length: 298aa MW: 32145.3 Da PI: 7.9755

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01005460G0120	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.3	9.7e-20	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd+ l ++v+q+G ++W++I r+++ gR++k+c++rw + PH01005460G0120 12 RGPWSPEEDDALRRLVEQHGARNWTAIGREIP-GRSGKSCRLRWCNQ 57 89****************************.*********985 PP
2	Myb_DNA-binding	46.8	6.6e-15	64	106	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eEd +++a+ + G++ W++Iar + gRt++ +k++w+ PH01005460G0120 64 RRPFTEEEDATILRAHVRVGNR-WAAIARLLH-GRTDNAVKNHWN 106 679*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.975	7	62	IPR017930	Myb domain
SuperFamily	SSF46689	2.55E-30	9	105	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-17	11	60	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-18	12	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-26	13	65	IPR009057	Homeodomain-like
CDD	cd00167	2.79E-16	14	56	No hit	No description
SMART	SM00717	1.5E-13	63	111	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.922	64	113	IPR017930	Myb domain
Pfam	PF00249	8.0E-13	64	106	IPR001005	SANT/Myb domain
CDD	cd00167	5.84E-10	66	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.8E-22	66	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MGGVEVECDR IRGPWSPEED DALRRLVEQH GARNWTAIGR EIPGRSGKSC RLRWCNQLSP 60 QVERRPFTEE EDATILRAHV RVGNRWAAIA RLLHGRTDNA VKNHWNCSLK RKLAVATVAA 120 GGVAADCADC ERPCKRVSPS PDSPSGSRSG SDRSDLSHGV GFGQIYRPVA RTGGFEPADC 180 AISRRHEADP LTSLSLSLPG MDQAFNHDSA HSHFQELPPS PSPPPPPVTA TPSYPFSPEF 240 MAAMQEMIRA EVQKYMASVG VRAGCGAAGG ADLFMPQLME GVMRAAAERV GGVGRMQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-37	9	113	4	108	B-MYB
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01005460G0120

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP093354	0.0	FP093354.1 Phyllostachys edulis cDNA clone: bphyem209d17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015641187.1	1e-149	transcription factor MYB77
TrEMBL	A0A0E0LDT2	1e-149	A0A0E0LDT2_ORYPU; Uncharacterized protein
STRING	OPUNC06G19910.1	1e-150	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP789	38	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	4e-61	myb domain protein 77