PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005551G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 698aa    MW: 76847.8 Da    PI: 8.0109
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005551G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000584971123
                     CHHHHHHHHHHHHHHHHHHHHHH CS
              HLH  1 rrrahnerErrRRdriNsafeeL 23
                     rr+  n  E+rRR++iN+   +L
  PH01005551G0030 49 RRQGSNRLEKRRRKKINTMPKKL 71
                     78999************976665 PP
2zf-B_box19.42.2e-0694135439
         zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                      r C+ ++  +   +C+ +  +lC++C ++ H+       H++
  PH01005551G0030  94 RPCDGCHAAPSAVYCRADAAYLCASCDTQVHSAnhvasrHER 135
                      67****************************965756666665 PP
3zf-B_box248.3e-08136181342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       r+C+ +e+ ++ l C+ +   lC +C  + H+       H++vp+
  PH01005551G0030 136 VRVCEACESAPAVLACRADAAELCTTCDAQVHSAnpiaqrHQRVPV 181
                      689*****************************66899999999986 PP
4CCT63.46.8e-22376419144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRYk+K++ RkFeK+irY++RKa+Ae RpR+KGrFvk++
  PH01005551G0030 376 REARVLRYKDKKRARKFEKTIRYATRKAYAEARPRIKGRFVKRS 419
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.9E-891138IPR000315B-box-type zinc finger
CDDcd000215.18E-894138No hitNo description
PfamPF006433.6E-594135IPR000315B-box-type zinc finger
PROSITE profilePS5011910.01196138IPR000315B-box-type zinc finger
PROSITE profilePS5011911.22134181IPR000315B-box-type zinc finger
PfamPF006433.6E-6136181IPR000315B-box-type zinc finger
CDDcd000211.48E-7137181No hitNo description
SMARTSM003363.1E-7139181IPR000315B-box-type zinc finger
PROSITE profilePS5101716.023376418IPR010402CCT domain
PfamPF062038.9E-16376418IPR010402CCT domain
PfamPF139667.0E-14579634IPR026960Reverse transcriptase zinc-binding domain
PROSITE profilePS500078.837613663IPR000909Phosphatidylinositol-specific phospholipase C, X domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MQVDKQQRKA HACKAGQHAP GTQAAGAKPA GGRRAEGAGE QRLSGDGARR QGSNRLEKRR  60
RKKINTMPKK LSSDIASSNL FEQEAGGTSF LWARPCDGCH AAPSAVYCRA DAAYLCASCD  120
TQVHSANHVA SRHERVRVCE ACESAPAVLA CRADAAELCT TCDAQVHSAN PIAQRHQRVP  180
VLPLPAAAIP AASGFAEAEA AVTAHGNKEE EEEANSWLLL SRDSDDNNCT NNNMYFGEVD  240
QYFDLVGYNL YHDNSVTSNP EEQYKMQEQQ HVQKRYREKG GSECVVPSQV AMASEQQQSG  300
YGIIGAEQAA SMAAGVSAYT ASISNSISFS SMEMGIVPDN NIADISNTSI LTTSGAMEML  360
SGHSLQMPVH FSSMDREARV LRYKDKKRAR KFEKTIRYAT RKAYAEARPR IKGRFVKRSD  420
IQHEVDHMFS PPALPDSSYD LGTAFLCRSI LPPAVSSEPQ LNASLAVEHG CFSGRITRSN  480
HQLSLPSLNS IHPWQWSTDA FLEGSLDPRA SPYGDCAVNF CNQHKEREHL VDQLAWKMTA  540
SGLYSVQLAY LHLFDGSLWT VHKELIWKCW APKTASGLYS VQLAYLHLFE GSLWTVHKEL  600
IWKCWAPMKC KFYVWLASHN RCLTVDNLAK RGYSVGVALG LQLLCDHVLL DIWNGRNGRI  660
FRGSGQPVQR IVEIVKNELA IWSDAGAAGL RLPLAHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005551G0030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3589250.0GQ358925.1 Dendrocalamus xishuangbannaensis CONSTANS-like protein (CO1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197651.10.0zinc finger protein HD1-like
TrEMBLA0A4D6FWP30.0A0A4D6FWP3_9POAL; CONSTANS-like protein 2
STRINGBRADI3G56260.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56223140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.12e-84CONSTANS-like 2