PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005591G0050
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 405aa    MW: 44847.6 Da    PI: 7.9907
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005591G0050genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.6e-07177198223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                       C+ Cgk F+r  nL+ H+r H
  PH01005591G0050 177 FCKVCGKGFKRDANLRMHMRGH 198
                      6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.43E-5174201No hitNo description
SMARTSM003550.0036176198IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03176203IPR007087Zinc finger, C2H2
PROSITE patternPS000280178198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.1E-6178202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035540224257IPR015880Zinc finger, C2H2-like
SMARTSM0035528262284IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MSSADHFASN QPSYFQPNRD FSQIMEGCNL ESTMRARHEQ SHGGQGAAGE DHSSSDPRTV  60
LTYLTFLEQK IGHLRGIICS TPHPQQQIVS AELGCIIVQL ISISKNLVAG TAASSSPRHN  120
EEADAKSPLN AHEGSDSDQD HHHAEEVADA DEQLLPPGSY EVIQIEKEEI LAPHVHFCKV  180
CGKGFKRDAN LRMHMRGHGD EYKAAGALAK PGSRDTSPPG RCFYSCPYVG CKRNKEHKNF  240
QPLKSPICVK NHYRRSHCDK SYTCRRCNVK KFSVLADLRT HEKHCGRDRW VCSCGTSFSR  300
KDKLFGHVAI FDGHTPALPP EAAAGCGGTG IFGTHYSGPK SQEAKSILQC VVCFSSVQSL  360
IHWPVWPLNL YSRMKNMLEI CARDHGYGDI KPIIWTYIRE HSVG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005591G0050
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666231e-130AK366623.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A04.
GenBankAK3667081e-130AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652000.11e-148PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ943I61e-106STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLJ3LUL51e-146J3LUL5_ORYBR; Uncharacterized protein
STRINGOB03G47410.11e-147(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-106C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]