PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005969G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 455aa    MW: 48365.5 Da    PI: 8.7962
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005969G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-1288112327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C ++++tG Ck+G++Ck++H++
  PH01005969G0060  88 QPVCEYYMKTGACKFGSNCKYHHPK 112
                      789********************96 PP
2zf-CCCH34.82.9e-11132157227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C+++++tG+Ck+  +CkF+H++
  PH01005969G0060 132 GEKECSYYMKTGQCKFSTTCKFHHPE 157
                      7899********************96 PP
3zf-CCCH40.73.8e-13287312227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++C++++rtG CkyG+ Ck++H++
  PH01005969G0060 287 GQPECQYYMRTGDCKYGAACKYNHPR 312
                      5799********************96 PP
4zf-CCCH322e-10335358427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       +C ++a++G+C+yG  Ck+ H++
  PH01005969G0060 335 QPCAYYAQNGYCRYGVACKYDHPM 358
                      69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-785112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.71385113IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-1088112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-788114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-590114IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5130157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.084130158IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8132157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5133157IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6285312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.69285313IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10288312IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5289313IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4291312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892331359IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6331358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5333361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5335356IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-8335358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGGALPHFIE RSRVQVCLQH QSITTSTGRC GLAVAVSINI NQTTSRRQEV KKIRGGPGTY  60
AGEVGGAREF AGGAKNAVSS DYPERLGQPV CEYYMKTGAC KFGSNCKYHH PKQDGSVQPV  120
MLNNSGFPLR PGEKECSYYM KTGQCKFSTT CKFHHPEFGG VPVTPGIYPP LQSSSVPSPH  180
PYAPLANWQM GRPHAPVVPG SYMPGSYTPM MLSSGMIPLQ GWSPYPASVN PVASGGAQQT  240
IQAGPLYGIG HHGSSSTIAY GGPYMLSSST GQSSNNQQEH GFPERLGQPE CQYYMRTGDC  300
KYGAACKYNH PRDWSALKSN YVFSPHCLPL RPGAQPCAYY AQNGYCRYGV ACKYDHPMGT  360
LSYSSSALPL SDMPIAPYPL GFSIATLAPS SSSPDLRPEY ISSKDSSVNQ IGSPVAASEP  420
VGSILPKGVF PPDTIMRAQT NTTAGGSSSP GGGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005969G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716260.0AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200471.10.0zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A453EMV20.0A0A453EMV2_AEGTS; Uncharacterized protein
STRINGEMT011680.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-96C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]