PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01006200G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 146aa    MW: 15984.3 Da    PI: 8.7034
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01006200G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027628123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     +kC +C+k+F++   L  H r+H
  PH01006200G0010  6 HKCFICHKVFPTGQALGGHKRKH 28
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.89E-6331No hitNo description
PfamPF139121.2E-11530IPR007087Zinc finger, C2H2
PROSITE profilePS501578.621633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MTNRVHKCFI CHKVFPTGQA LGGHKRKHYD KGVGGAASST ELLAAASAAE SEVGSSNNGN  60
SATWAFDLNL SAVPKFVWWP CAKGKNMWED KEVQSPLTFS PCEHLHGSDP SKVFGLVMKL  120
KSNTIRSFVR CRYCLICSWS FIESE*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01006200G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939071e-139FP093907.1 Phyllostachys edulis cDNA clone: bphylf045a24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633313.13e-41zinc finger protein 1
SwissprotQ424301e-41ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0E0D7925e-43A0A0E0D792_9ORYZ; Uncharacterized protein
STRINGOMERI03G31660.18e-44(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.24e-11zinc-finger protein 2