PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01006252G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 1051aa    MW: 115946 Da    PI: 7.3838
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01006252G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.75.3e-19582681198
                      EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e+
  PH01006252G0020 582 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEG 673
                      89**************************555566778***************9989999999***9.********************987.777 PP

                      ..EEEEE- CS
               B3  91 elvvkvfr 98 
                      +lv+++++
  PH01006252G0020 674 KLVMGFRK 681
                      77777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-30577683IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-20579681IPR015300DNA-binding pseudobarrel domain
CDDcd100174.99E-23580681No hitNo description
PfamPF023625.3E-16582681IPR003340B3 DNA binding domain
SMARTSM010192.0E-22582682IPR003340B3 DNA binding domain
PROSITE profilePS5086311.364582683IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1051 aa     Download sequence    Send to blast
MPVKEKKDQK THDAILKDLN LESIAWEPNL EEWVARATLY DTLQDTVGFP FTFTLVLFIW  60
NLYFLGPIDL YFHFRSGLPW SLQLKRHVFT ESAAIDALKH FIPTYLGYSG EKIVNDTISK  120
YVTLLDDANV AARRGAALAL GILPYNFLDK PDDPDAEARV NSVRGLISVC ETLSASVDPS  180
SNGVDSVYAY IKDKVMQALF RALDDYAVDN RGDVGFWMVE PTAAAITVEP RRAQLPHRVS  240
FEQGSFCETF HSEVAGWRTC EACGKKLHCG CIVSVHAYVL LDAGGVDCIL CARKSHAAMA  300
PGQTWPSSVH MPQNVADRKD SFVKSWRPPA GQFSSQWRQT NLWSVSSIQS DLQQRLAYEF  360
DRPSGSEKLL PGRTFIHAQE KKFDDMHDRP TTPAGMNQII RDRYANGHGQ HASLDPTYSY  420
TLYHREGSNP NSLHDPSHHG GENDPLSSRK GVIPDPCSSV SAGFKLDSHH PSILKDDPPT  480
LPVGLPANFA SANGPKDHIR IAPAQQQSQL ASSSLQKQFY SHSVIDNDFQ AQMRHGRPRM  540
DAKARSQLLP RYWPRITDQE LQHLSGEYPK NSTSNSVITP LFEKMLSASD AGRIGRLVLP  600
KKCAEAYFPP ISQPEGLPLK VQDASGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA  660
GDTVTFSRID PEGKLVMGFR KATNLSAEQE QPIKPVNGGP TSSEVNGKVP APDSSPNAAV  720
PRPNKVNIES KSPSPVEQTA ASKMDKGGLA QKEGPGTARS SPGPIKRKAT SVGPKIKRLR  780
MDNEESMELK ITWEEAQELL RPPLKAPLIV IVDGHEFEEY EEPPILGRRT YFVTDQSGTS  840
CASAQEISVE ELAELIPIKA GAAKKSKAKI ETDSIEVSDG LDTLANLAIL GEGESLPSQP  900
TTRHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCMTVR RRFRTLMLRR EKRQSVKDSE  960
APRRKDPGQS SESIPQTGSG PPPASTSTTS STQKAETNAD GAEDMAVEHR MTSSPIKNQI  1020
DLNIQPERED EQSPKSDAVG AMRLLRDNPT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-625546841125B3 domain-containing transcription repressor VAL1
5yzz_C2e-625546841125B3 domain-containing transcription repressor VAL1
5z00_C2e-625546841125B3 domain-containing transcription repressor VAL1
5z00_G2e-625546841125B3 domain-containing transcription repressor VAL1
5z00_K2e-625546841125B3 domain-containing transcription repressor VAL1
5z00_M2e-625546841125B3 domain-containing transcription repressor VAL1
6j9a_A2e-625546842126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01006252G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647112.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0D3GSF70.0A0A0D3GSF7_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0ED460.0A0A0E0ED46_9ORYZ; Uncharacterized protein
STRINGOMERI07G15800.10.0(Oryza meridionalis)
STRINGOBART07G18780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-118HSI2-like 1