PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007432G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 220aa    MW: 22793.6 Da    PI: 9.1106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007432G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-2075125255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f+tae+Aa a+++a+ +++g
  PH01007432G0010  75 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAAVAYDRAAYRMRG 125
                      8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-2974133No hitNo description
Gene3DG3DSA:3.30.730.101.5E-3274133IPR001471AP2/ERF domain
PROSITE profilePS5103224.23675133IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2475135IPR016177DNA-binding domain
SMARTSM003801.0E-3875139IPR001471AP2/ERF domain
PfamPF008472.7E-1375125IPR001471AP2/ERF domain
PRINTSPR003674.0E-117687IPR001471AP2/ERF domain
PRINTSPR003674.0E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVVYGALRDA FSRGWLPDGS FAAVKPEPLP SPDSYGGSCL GSFLASEPET PGEVSSTTPG  60
KEEVEAAAAA SRGKHYRGVR QRPWGKFAAE IRDPAKNGAR VWLGTFDTAE DAAVAYDRAA  120
YRMRGSRALL NFPLRIGSEI AAAAAAAAVG DKRPCPEPAS SDSSSPSSSG SPKRRKRGEA  180
AAASMAMALV PPPPAQDPAQ LTLPAQPWFA AGPVQQLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-4071138168ATERF1
3gcc_A4e-4071138168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007432G0010
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0938980.0FP093898.1 Phyllostachys edulis cDNA clone: bphyem121f18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570010.14e-92ethylene-responsive transcription factor 1
SwissprotQ404791e-50ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A287UE745e-97A0A287UE74_HORVV; Uncharacterized protein
STRINGBRADI3G50490.12e-91(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-37ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]