PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007485G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 303aa    MW: 33671.4 Da    PI: 5.3396
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007485G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.2e-12173198126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  PH01007485G0020 173 YQPDICKDYKETGYCGYGDSCKFMHD 198
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.7E-9171203IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12173203IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10173198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.5E-10240280IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.53E-10249279No hitNo description
SMARTSM001840.0045250289IPR001841Zinc finger, RING-type
PfamPF000975.7E-6250286IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS500899.126250286IPR001841Zinc finger, RING-type
CDDcd001627.29E-7250286No hitNo description
PROSITE patternPS005180265274IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGEWEEGTVG VKEGEEGGSG AAQAKRRGAA RAEGEEGATG RVPLVGEHAL ALHEALNLYK  60
ITSPRRFQYE SSRTIQASTD GRATATLETE TEFDRDARAI RERQLKQAEE SLKKNPSSAS  120
ASGSGEVYKG IHGYTDYKAG FRREHTVSGE KAGGSHGPLR ASAHIRLSAR FDYQPDICKD  180
YKETGYCGYG DSCKFMHDRG DYKSGWQIEK EWDEAEKARK RRIAMGGEDG SDGEAEEEDD  240
DDEEALPFAC YICRQPFVDP VVTKCKHYFC EHCALKVWLN LFRVRCMLII MPIICATDEF  300
VI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-5369276100288RING finger protein 113A
5z58_M3e-5369276100288RING finger protein 113A
6ff4_t3e-5369276100288RING finger protein 113A
6ff7_t3e-5369276100288RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007485G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.11e-139zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-122C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A453IHT01e-141A0A453IHT0_AEGTS; Uncharacterized protein
STRINGEMT145291e-137(Aegilops tauschii)
STRINGTraes_4DL_4C78C56A4.11e-137(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-107C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]