PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007678G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 195aa    MW: 20942.5 Da    PI: 7.5002
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007678G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.77.2e-076099342
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HH CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLter 42
                     kR   t++ le+Le+ + +++y++++ r+eL  klgL +r
  PH01007678G0020 60 KRVMKTPYHLEVLEKTYTEDPYLDETLRAELLVKLGLMDR 99
                     89999*******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.33E-64197IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-64598IPR009057Homeodomain-like
CDDcd000863.75E-56096No hitNo description
PfamPF000461.4E-46099IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAVVRHMRGK GYVWVVLYSL YRVLDEGTGV GKLESPTLAS APATGGGAGT SGSGGKPAAK  60
RVMKTPYHLE VLEKTYTEDP YLDETLRAEL LVKLGLMDRG PGRSSAVPRI SVPKIGRRYY  120
EPPQVMLPPL VPMQLTQAER QVIDSVQELI GELLREDGPV LGFEFDPLPP GAFGAPIGMG  180
LLPVMLPSCI LFVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007678G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639400.12e-36homeobox-DDT domain protein RLT2 isoform X1
RefseqXP_015639401.12e-36homeobox-DDT domain protein RLT2 isoform X2
TrEMBLM8CI712e-49M8CI71_AEGTA; Uncharacterized protein
STRINGEMT229663e-50(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1674079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.13e-12Homeodomain-like transcriptional regulator