PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01007980G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 237aa    MW: 25423 Da    PI: 8.0016
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01007980G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.21.7e-0987132454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e Er+RRd+ +  f  Lr  +P+      ++++Ka+ L  A  YI +L
  PH01007980G0020  87 SHVETERQRRDKHKRLFCDLRAAVPTV-----TRMDKASLLADAAAYIVEL 132
                      799***********************8.....7***************777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-1476143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5783132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-787132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-787137No hitNo description
Gene3DG3DSA:4.10.280.103.5E-1387146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-689138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDELLLSFSS SRSPVDAFFS AAGHRPVLEF MSCDVPEEWP LADNSAWAVG STLWAGSDMS  60
TQGNAPAPAG KRRGRKPGPR SEGTAISHVE TERQRRDKHK RLFCDLRAAV PTVTRMDKAS  120
LLADAAAYIV ELRGRVERLE AEAKQAAALA GPSKLEEKLD VRMVGREAAA VRLTTAAQHA  180
PARLMVTLRA LDLPVQHACV SRVGAVTVQN VVVDVPAALQ EEGCLRAALL HSLQES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1586156777Transcription factor MYC2
5gnj_B4e-1586156777Transcription factor MYC2
5gnj_E4e-1586156777Transcription factor MYC2
5gnj_F4e-1586156777Transcription factor MYC2
5gnj_G4e-1586156777Transcription factor MYC2
5gnj_I4e-1586156777Transcription factor MYC2
5gnj_M4e-1586156777Transcription factor MYC2
5gnj_N4e-1586156777Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100QRRDKHKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01007980G0020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0973411e-122FP097341.1 Phyllostachys edulis cDNA clone: bphylf031p01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004974086.22e-91transcription factor MYC2
TrEMBLA0A368RQ193e-90A0A368RQ19_SETIT; Uncharacterized protein
STRINGSi015513m6e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-21bHLH family protein