PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01013915G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 170aa    MW: 18762.1 Da    PI: 8.4016
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01013915G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.4e-073253627
                     -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                     C ++ ++G Ck G +C F+H+p
  PH01013915G0010 32 CFYYVKFGSCKNGMNCEFNHPP 53
                     779*****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0832653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-52853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.8733154IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-43253IPR000571Zinc finger, CCCH-type
SMARTSM003561.681108IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.9281109IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSLRTRSPLP ARSRSRAAEK DEYPRRSEVL DCFYYVKFGS CKNGMNCEFN HPPKPSGRPD  60
PAGEMQQKQE EAPAEPEYLW RPGEPDCAYY VKFGSCKYGM NSKFNHRPKP SGCPVEGRDT  120
NSSNGNEAPS SEYKQVTGPS LLLSASVWRA CTCACMSCGK VSVDMARIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01013915G0010
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9IRL01e-24A0A0A9IRL0_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2234747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.18e-15floral homeotic protein (HUA1)