PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01021666G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 224aa    MW: 23684.2 Da    PI: 6.775
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01021666G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY857e-272182159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                     ldDg++WrKYGqK++ g+++pr+Y+rCt++   +C + k+v+r++ dp +++++Y+g+H++ 
  PH01021666G0010 21 LDDGFSWRKYGQKDILGAKYPRAYFRCTHRhtqNCYASKQVQRTDGDPLLFDVVYHGNHTCA 82
                     59***************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-28883IPR003657WRKY domain
SuperFamilySSF1182901.12E-251483IPR003657WRKY domain
PROSITE profilePS5081120.611679IPR003657WRKY domain
SMARTSM007746.8E-392183IPR003657WRKY domain
PfamPF031065.0E-252281IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
KTLPKWSTQV RVSTVQDVGP LDDGFSWRKY GQKDILGAKY PRAYFRCTHR HTQNCYASKQ  60
VQRTDGDPLL FDVVYHGNHT CAQSPRSNSQ WPRPAASAEH PHPQPGQEQS STTSVGFKAE  120
GGAQGLEPVL PQFSFPSTQA GANTGGAASS GVPSCVVTAP SFVSPAKSEC QVSGSGYAAG  180
GGSLAGVRNV ADVELTSTTN SPMGDMDFML QLDADFLDNP GYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-211881568OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01021666G0010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8274014e-97KR827401.1 Triticum aestivum WRKY50 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182144.13e-87probable WRKY transcription factor 53
TrEMBLF2CXI64e-94F2CXI6_HORVV; Predicted protein (Fragment)
TrEMBLM0W7993e-94M0W799_HORVV; Uncharacterized protein
STRINGMLOC_44455.15e-95(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.15e-38WRKY family protein