PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01026494G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 180aa    MW: 18768.2 Da    PI: 7.9038
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01026494G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-204694355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r+++ +grW+AeIrdp++    +r++lg++ taeeAa+a++aa++ ++g
  PH01026494G0010 46 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATAEEAARAYDAAARDIRG 94
                     9*******.**********954...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.7545102IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2245103IPR016177DNA-binding domain
SMARTSM003801.3E-3345108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3145102IPR001471AP2/ERF domain
PfamPF008473.6E-144594IPR001471AP2/ERF domain
CDDcd000188.55E-1846104No hitNo description
PRINTSPR003672.6E-114657IPR001471AP2/ERF domain
PRINTSPR003672.6E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MCGGAIIAGC VPASERRPAT DTSASSLTGE ELTTVKLPPP GRKTAYRGIR RRPWGRWAAE  60
IRDPRKGARV WLGTYATAEE AARAYDAAAR DIRGAKAKLN FPPAVGALPA ATGAAANKRR  120
RVAAEESSGS SCLPAAAGGG GAERLRECMS GLEAFLGLED VAEEGDDMEP WDAVNLMLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-21461021572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01026494G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560722e-67EU956072.1 Zea mays clone 1556883 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148477.12e-68ethylene-responsive transcription factor RAP2-3-like
TrEMBLF8SLT72e-76F8SLT7_HORVV; AP2/EREBP-like protein
STRINGMLOC_64636.14e-77(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.16e-23ERF family protein