PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01029174G0010

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

WRKY

Protein Properties

Length: 254aa MW: 26479.3 Da PI: 6.032

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01029174G0010	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.7	7.6e-31	55	113	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp++++ tY+geHnh PH01029174G0010 55 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRADPNTFILTYTGEHNHA 113 69***********************998**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.3E-31	40	115	IPR003657	WRKY domain
PROSITE profile	PS50811	33.224	49	115	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-26	52	115	IPR003657	WRKY domain
SMART	SM00774	1.9E-36	54	114	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	56	112	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010150	Biological Process	leaf senescence
GO:0010200	Biological Process	response to chitin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MKPADGDLQA AAPASALGRA QPSVRQVSGG VPRSKRRKNQ QKKVVCHVPA DGVSADVWAW 60 RKYGQKPIKG SPYPRGYYRC SSSKGCAARK QVERSRADPN TFILTYTGEH NHAAPSHRNS 120 LAGTTRQKFP SPASSAAPQP PPQSVVVAAE ARQHLSPPST SAGLSPTTPL RTPSMEEDEE 180 EEDELLVEDM DIAGEDELLF LNGDCDAAAA LLDGSSATPM SSLFDAVDEP FLGSPWASAT 240 AGEAAAGAAG AGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-19	38	116	2	80	Disease resistance protein RRS1
5w3x_D	3e-19	38	116	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269\|PubMed:11875555}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00422	DAP	Transfer from AT4G01250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01029174G0010

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced after flagellin treatment. {ECO:0000269\|PubMed:11875555}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT034363	1e-133	BT034363.1 Zea mays full-length cDNA clone ZM_BFb0129I18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451907.1	1e-100	probable WRKY transcription factor 27
Swissprot	O04609	6e-54	WRK22_ARATH; WRKY transcription factor 22
TrEMBL	C5XZJ0	4e-99	C5XZJ0_SORBI; Uncharacterized protein
STRING	Sb04g009800.1	1e-100	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5358	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01250.1	2e-52	WRKY family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Gkizi D, et al. The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae. Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23 [PMID:26780421] Kloth KJ, et al. AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling. J. Exp. Bot., 2016. 67(11): p. 3383-96 [PMID:27107291] Camborde L, et al. Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy. Nat Protoc, 2017. 12(9): p. 1933-1950 [PMID:28837131] Wang S, et al. Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22. Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322 [PMID:29090631]