PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01088680G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 219aa    MW: 23015.6 Da    PI: 5.6367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01088680G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1853102255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  PH01088680G0010  53 TYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 102
                      69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-3753116IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2253111IPR016177DNA-binding domain
PfamPF008471.8E-1253102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-3253111IPR001471AP2/ERF domain
PROSITE profilePS5103222.99853110IPR001471AP2/ERF domain
PRINTSPR003679.3E-115465IPR001471AP2/ERF domain
CDDcd000186.56E-3254112No hitNo description
PRINTSPR003679.3E-117692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGAMEDCSSG SEPTTSSSAE VPASPPSPTA TSTASSSNAA KKKRPRKDGH HPTYRGVRMR  60
SWGKWVSEIR EPRKKSRIWL GTFATAEMAA RAHDVAALAI KGRAAHLNFP DLAHELPRPA  120
TAAPKDVQAA AALAAAADFP PSANAGVNNP DPSDASVGSA SPPADTTDEA LFDLPDLFLD  180
LRYGPPSCQL SCASSWDDDV AFTGAGVFRL EEPLLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18511101272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01088680G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076621e-130AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAK1088301e-130AK108830.1 Oryza sativa Japonica Group cDNA clone:002-151-G03, full insert sequence.
GenBankAP0050061e-130AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0052891e-130AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149581e-130AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582791e-130AY258279.1 Oryza sativa (japonica cultivar-group) CR102 putative AP2 domain-containing protein gene, complete cds.
GenBankAY3460941e-130AY346094.1 Oryza sativa AP2 domain-containing protein Rap211 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194841.12e-97ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ73e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLQ3T5P21e-103Q3T5P2_HORVV; HvCBF7
STRINGMLOC_3095.11e-104(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-39ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]